PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG014800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 553aa    MW: 58036.4 Da    PI: 4.2376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG014800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-13306349755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +ErrRR+++N+++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  Pavir.1KG014800.2.p 306 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 349
                          58*********************7.....7***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.24E-14298360No hitNo description
SuperFamilySSF474596.02E-18299361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.974299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10306349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-17306360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00313431496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAGGDHQCMA AAAAAAAGDG GASVESALRP LVGADAWDYC IYWRLSPDQR FLEMTGFCCS  60
SEFEAQISAL GELPSSIPLD SSSAGMHAEA MLSNQPIWQT SCVSEIPASY SSEHASSGGP  120
RTRLLVPVAG GLVELFAARF MAEEEQMAEL VMAQCGVPAA GAGDGEGNEG GVVVNAWPEA  180
APGFAWDGAA ADPQRMYAAV PSLNLFDAAG NVAADAFLAA AAAPGVVDDA DAAAAGWQYA  240
AAAGSEPSVV AVQQEQPQPL QNGGARAGGA DSGSEGSDIQ GDPEDDGDGD GQGRGGGKRQ  300
QCKNLVAERR RRKKLNDRLY KLRSLVPNIT KMDRASILGD AIDYIVGLQN QVKELQDELE  360
DRADGAPDVL LDHPPPASLV GLENDDSPRT SLHQPAAAGS KRPRAAAEEE KGHDMEPQVE  420
VRQVEANEFF LQVLCEHKPG HFVRLMDAVN ALGLEVTNVN VTSYKTLVLN VFRVVSRDNE  480
VAVQADRVRD SLLEVMRESY GVWSSKPPVM GSGGADAKLD GVDVKLDDVD AQAQAAAEDH  540
FGGYNHLLQY LA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307314ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343260.0BT034326.1 Zea mays full-length cDNA clone ZM_BFc0007A07 mRNA, complete cds.
GenBankBT0427910.0BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds.
GenBankBT0630100.0BT063010.2 Zea mays full-length cDNA clone ZM_BFc0017C04 mRNA, complete cds.
GenBankBT0631180.0BT063118.1 Zea mays full-length cDNA clone ZM_BFc0027J15 mRNA, complete cds.
GenBankBT0657170.0BT065717.1 Zea mays full-length cDNA clone ZM_BFc0042K04 mRNA, complete cds.
GenBankBT0677850.0BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
GenBankBT0688360.0BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds.
GenBankBT0880900.0BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds.
GenBankBT0882990.0BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700937.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700936.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700935.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700934.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
SwissprotQ6YUS30.0TDR_ORYSJ; Transcription factor TDR
TrEMBLK3XW910.0K3XW91_SETIT; Uncharacterized protein
STRINGSi006199m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-56bHLH family protein